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Showing 1659 results for "computer graphics" in Chemistry
Chemistry Preprint PDF DOI

Stepping up enhanced rate calculations with EATR-flooding

Nicodemo Mazzaferro, Willmor J Pena Ccoa, Pilar Cossio, Glen M. Hocky · 2026

Several recent methods have shown that it is possible to compute rate constants of very slow biomolecular processes using simulations where a time-dependent bias is added along one or several collecti…

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Chemistry Preprint PDF DOI

Charge order, domain order, ideal mixing and absence of demixing in 2D binary mixtures of alcohols

Lydia Chelli, Aurelien Perera · 2026

Binary mixtures of two dimensional, site-based models of alcohols are investigated by computer simulations, with a focus on ideal mixing, local clustering and miscibility trends. Four representative s…

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Chemistry Preprint PDF DOI

Performance of Quadrupole Mass Filter with Tapered and Flared Geometry

Anushree Dutta, Pintu Mandal, Nabanita Deb · 2026

The performance of a quadrupole mass filter (QMF) is highly sensitive to deviations from ideal electrode geometry. In this work, we investigate the effect of small inward and outward tilting of cylind…

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Chemistry Preprint PDF DOI

VPT2 Calculations of Vibrational Energies of CH3COOC6H4COOH Done in Seconds on a Laptop Using a Machine Learned Potential

Saikiran Kotaru, Chen Qu, Apurba Nandi, Paul L. Houston, Joel M. Bowman · 2026

The determination of quartic force fields for use in vibrational second-order perturbation (VPT2) calculations, currently available in numerous electronic structure packages, becomes very expensive as…

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Chemistry Preprint PDF DOI

Predicting Solvation Free Energies of Molecules and Ions via First-Principles and Machine-Learning Molecular Dynamics

Junting Yu, Shuo-Hui Li, Ding Pan · 2026

The solvation free energy (SFE) of molecules and ions is a fundamental property governing their solvation behavior and solubility. Molecular simulations offer a route to compute SFEs using alchemical …

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Chemistry Preprint PDF DOI

Frozen density embedding with pCCD electron densities

Rahul Chakraborty, Pawe{l} Tecmer · 2026

The pair-coupled-cluster doubles (pCCD) method has emerged as a viable approach for quantum-chemical studies of strongly correlated systems. Despite its lower formal scaling (O(N$^4$)) compared to oth…

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Chemistry Preprint PDF DOI

Configuration interaction extension of AGP for incorporating inter-geminal correlations

Airi Kawasaki, Fei Gao, Gustavo E. Scuseria · 2026

In this paper, we develop a class of antisymmetrized geminal power configuration interaction (AGP-CI) wave functions that extend the AGP framework by incorporating inter-geminal correlations through a…

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Chemistry Preprint PDF DOI

Ion-Specific Anomalous Water Diffusion in Aqueous Electrolytes: A Machine-Learned Many-Body Force Field Study with MACE

Massimo Ciacchi, Ilnur Saitov, Nico Di Fonte, Isabella Daidone, Carlo Pierleoni · 2026

The dynamics of water in electrolyte solutions exhibits a striking, ion-specific anomaly: the diffusion coefficient of water is enhanced relative to the neat liquid in chaotropic CsI solutions, yet su…

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Chemistry Preprint PDF DOI

Free energy differences and coexistence of clathrate structures II and H via lattice-switch Monte Carlo

Olivia S. Moro, Nigel B. Wilding, Vincent Ballenegger · 2026

We introduce a simulation technique to compute the free energy difference between two hydrate structures of different stoichiometry connected to a reservoir of gas molecules at a prescribed pressure. …

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Chemistry Preprint PDF DOI

The BOS-TMC Dataset: DFT Properties of 159k Experimentally Characterized Transition Metal Complexes Spanning Multiple Charge and Spin States

Aaron G. Garrison, Jacob W. Toney, Tatiana Nikolaeva, Roland G. St. Michel, Christopher J. Stein, Heather J. Kulik · 2026

We present the Boston Open-Shell Transition Metal Complex (BOS-TMC) dataset, a set of density functional theory (DFT) properties for 159k experimentally characterized mononuclear transition metal comp…

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Chemistry Preprint PDF DOI

The correlation discrete variable representation revisited

Uwe Manthe · 2026

The correlation discrete variable representation (CDVR) enables efficient quantum dynamics calculation with the multi-layer multi-configurational time-dependent Hartree (MCTDH) approach on general pot…

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Chemistry Preprint PDF DOI

Hunting for quantum advantage in electronic structure calculations is a highly non-trivial task

Ors Legeza, Andor Menczer, Miklos Antal Werner, Sotiris S. Xantheas, Frank Neese, Martin Ganahl, Cole Brower, Samuel Rodriguez Bernabeu, Jeff Hammond, John Gunnels · 2026

In light of major developments over the past decades in both quantum computing and simulations on classical hardware, it is a serious challenge to identify a real-world problem where quantum advantage…

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Chemistry Preprint PDF DOI

Understanding the Density Maximum of Water with Machine Learned Potentials

Yizhi Song, Renxi Liu, Chunyi Zhang, Yifan Li, Biswajit Santra, Mohan Chen, Michael L. Klein, Xifan Wu · 2026

After melting, at ambient pressure, the density of water continues to increase with temperature until it reaches a maximum around 4 {\deg}C. For nearly a century, this phenomenon has been qualitativel…

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Chemistry Preprint PDF DOI

A theoretical and experimental assessment of adiabatic losses in force-gradient-detected magnetic resonance of nitroxide spin labels

Michael C. Boucher, Peter Sun, Eric W. Moore, John A. Marohn · 2026

We recently introduced a new theoretical description of Landau--Zener--St\"{u}ckelberg--Majorana (LZSM) transitions that accounts for both adiabatic and spin-dephasing losses during sweeps through res…

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Chemistry Preprint PDF DOI

Microscopic Structure and Dynamics of Interfacial Water at Fluorinated vs Nonfluorinated Surfaces -- Insights from Ab-Initio Simulations and IR Spectroscopy

Maximilian R. Becker, Ruben Cruz, Kenichi Ataka, Joachim Heberle, Roland R. Netz · 2026

Per- and polyfluoroalkyl substances are a class of synthetic chemical compounds widely used as coatings to lower surface energies. Yet the microscopic mechanisms of their weak interaction with water a…

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Chemistry Preprint PDF DOI

Implementation of the multigrid Gaussian-Plane-Wave algorithm with GPU acceleration in PySCF

Rui Li, Xing Zhang, Qiming Sun, Yuanheng Wang, Junjie Yang, Garnet Kin-Lic Chan · 2026

We introduce a GPU-accelerated multigrid Gaussian-Plane-Wave density fitting (FFTDF) approach for efficient Fock builds and nuclear gradient evaluations within Kohn-Sham density functional theory, as …

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Chemistry Preprint PDF DOI

Permeation of hydrogen across graphdiyne: molecular dynamics vs. quantum simulations and role of membrane motion

Mateo Rodriguez, Jose Campos-Martinez, Marta I. Hernandez · 2026

Previous research based on electronic structure calculations and molecular dynamics (MD) simulations have demonstrated that graphdiyne (GDY) is a very suitable two-dimensional membrane for the separat…

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Chemistry Preprint PDF DOI

Electronic properties of the Radium-monochalcogenides RaX (X = O,S,Se) and RaO+/- ions

Mateo Londono, Jesus Perez-Rios · 2026

We present a theoretical investigation on the electronic structure and properties of radium monochalcogenides, with chalcogens O, S, and Se, as well as the ionic species RaO +/-. Our approach combines…

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Chemistry Preprint PDF DOI

Two-dimensional IR-Raman spectroscopy of vibrational polaritons: Role of dipole surfaces

Xinwei Ji, Tomislav Begusic, Tao E. Li · 2026

Nonlinear spectroscopy provides a unique perspective to understand time-resolved molecular dynamics under vibrational strong coupling (VSC). Herein, equilibrium-nonequilibrium cavity molecular dynamic…

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Chemistry Preprint PDF DOI

Molecular dynamics simulation of high slip flow of water confined between graphene nanochannels at experimentally accessible strain rates

Carmelo Civello, Luca Maffioli, Edward Smith, James Ewen, Peter Daivis, Daniele Dini, Billy Todd · 2026

The transient time correlation function method (TTCF) has emerged as a powerful methodology for accurately probing systems at low shear rates. In the present study, TTCF was used to evaluate the shear…

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