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🔍 daniel osherson 📂 Chemistry
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Chemistry Preprint PDF DOI

KANEL: Kolmogorov-Arnold Network Ensemble Learning Enables Early Hit Enrichment in High-Throughput Virtual Screening

Pavel Koptev, Nikita Krainov, Konstantin Malkov, Alexander Tropsha · 2026

Machine learning models of chemical bioactivity are increasingly used for prioritizing a small number of compounds in virtual screening libraries for experimental follow-up. In these applications, ass…

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Chemistry Preprint PDF DOI

On the Hamiltonian used in Polaritonic Chemistry

Marit R. Fiechter, Mark Kamper Svendsen · 2025

Experiments have shown that strong coupling between molecular excitations and a mode of a Fabry--P\'erot cavity can significantly alter molecular properties, such as reaction rates and equilibrium con…

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Chemistry Preprint PDF DOI

Unveiling the Dance of Molecules: Ro-Vibrational Dynamics of Molecules under Intense Illumination at Complex Plasmonic Interfaces

Maxim Sukharev, Joseph E. Subotnik, Abraham Nitzan · 2024

Understanding the quantum dynamics of strongly coupled molecule-cavity systems remains a significant challenge in molecular polaritonics. This work develops a comprehensive self-consistent model simul…

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Chemistry Preprint PDF DOI

Dispersion Interaction Between Thin Conducting Cylinders

Subhojit Pal, Iver Brevik, Mathias Bostrom · 2024

The ground state and excited state resonance dipole-dipole interaction energy between two elongated conducting molecules are explored. We review the current status for ground state interactions. This …

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Chemistry Preprint PDF DOI

Zepto to Attosecond core-level photoemission time delays in homonuclear diatomic molecules and non-dipole effects in the framework of Multiple Scattering theory

Yoshiaki Tamura, Kaoru Yamazaki, Kiyoshi Ueda, Keisuke Hatada · 2024

This study theoretically investigates the angular distribution of core-level photoemission time delay within a molecular frame. This phenomenon can be measured with the advancement of attosecond pulse…

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Chemistry Preprint PDF DOI

Evaluation of the $\textit{Breit-Hartree}$ contribution to the total energy of open atomic shells

Benjamin Buchholz · 2023

In this work the $\textit{Breit-Hartree}$ interaction, as the lowest order relativistic correction to the $\textit{Coulomb}$ interaction, is extensively analyzed in the framework of relativistic $\tex…

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Chemistry Preprint PDF DOI

Alchemical diastereomers from antisymmetric alchemical perturbations

O. Anatole von Lilienfeld, Giorgio Domenichini · 2023

The energy difference between two iso-electronic systems can be accurately approximated by the alchemical first order Hellmann-Feynmann derivative for the averaged Hamiltonian. This approximation is e…

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Chemistry Preprint PDF DOI

Sensitivity of Coupled Cluster Electronic Properties on the Reference Determinant: Can Kohn-Sham Orbitals Be More Beneficial than Hartree-Fock Orbitals?

Zsolt Benedek, Paula Timar, Tibor Szilvasi, Gergely Barcza · 2021

Coupled cluster calculations are traditionally performed over Hartree-Fock reference orbitals (HF-CC methodology). However, it has been repeatedly argued in the literature that the use of a Kohn-Sham …

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Chemistry Preprint PDF DOI

Learning intermolecular forces at liquid-vapor interfaces

Samuel P. Niblett, Mirza Galib, David T. Limmer · 2021

By adopting a perspective informed by contemporary liquid state theory, we consider how to train an artificial neural network potential to describe inhomogeneous, disordered systems. We find that neur…

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Chemistry Preprint PDF DOI

Highly Heterogeneous Polarization and Solvation of Gold Nanoparticles in Aqueous Electrolytes

Zhujie Li, Victor G. Ruiz, Matej Kanduc, Joachim Dzubiella · 2021

The performance of gold nanoparticles (NPs) in applications depends critically on the structure of the NP-solvent interface, at which the electrostatic surface polarization is one of the key character…

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Chemistry Preprint PDF DOI

Review and Prospect: NMR Spectroscopy Denoising & Reconstruction with Low Rank Hankel Matrices and Tensors

Tianyu Qiu, Zi Wang, Huiting Liu, Di Guo, Xiaobo Qu · 2020

Nuclear Magnetic Resonance (NMR) spectroscopy is an important analytical tool in chemistry, biology, and life science, but it suffers from relatively low sensitivity and long acquisition time. Thus, i…

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Chemistry Preprint PDF DOI

A Simple Electrostatic Model for the Hard-Sphere Solute Component of Nonpolar Solvation

Christopher D. Cooper, Jaydeep P. Bardhan · 2020

We propose a new model for estimating the free energy of forming a molecular cavity in a solvent, by assuming this energy is dominated by the electrostatic energy associated with creating the static (…

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Chemistry Preprint PDF DOI

Theoretical treatment of Coriolis effect using hyper-spherical coordinates, with application to the ro-vibrational spectrum of ozone

Igor Gayday, Alexander Teplukhin, Brian K. Kendrick, Dmitri Babikov · 2020

Several alternative methods for description of interaction between rotation and vibration are compared and contrasted using hyper-spherical coordinates for a triatomic molecule. These methods differ b…

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Chemistry Preprint PDF DOI

$^{27}\text{Al }$ NMR chemical shift of $\text{Al}(\text{OH})_{4}^{-}$ from first principles. Assessment of error cancellation in NMR chemical shift computations in chemically distinct reference and targeted systems

Ernesto Martinez-Baez, Rulin Feng, Carolyn I. Pearce, Gregory K. Schenter, Aurora E. Clark · 2019

Predicting accurate NMR chemical shieldings relies upon cancellation of different types of error in the ab initio methodology used to calculate the shielding tensor of the analyte of interest and the …

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Chemistry Preprint PDF DOI

Exact partition potential for model systems of interacting electrons in 1-D

Yan Oueis, Adam Wasserman · 2018

We find the numerically exact partition potential for 1-D systems of interacting electrons designed to model diatomic molecules. At integer fragment occupations, the kinetic contribution to the partit…

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Chemistry Preprint PDF DOI

Excitation energies from diffusion Monte Carlo using selected Configuration Interaction nodes

Anthony Scemama, Anouar Benali, Denis Jacquemin, Michel Caffarel, Pierre-Francois Loos · 2018

Quantum Monte Carlo (QMC) is a stochastic method which has been particularly successful for ground-state electronic structure calculations but mostly unexplored for the computation of excited-state en…

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Chemistry Preprint PDF DOI

An All-DFTB Approach to the Parametrization of the System-Bath Hamiltonian Describing Exciton-Vibrational Dynamics of Molecular Assemblies

Per-Arno Plotz, Jorg Megow, Thomas Niehaus, Oliver Kuhn · 2018

Spectral density functions are central to the simulation of complex many body systems. Their determination requires to make approximations not only to the dynamics but also to the underlying electroni…

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Chemistry Preprint PDF DOI

Statistical analyses of hydrophobic interactions: A mini-review

L. R. Pratt, Mangesh I. Chaudhari, Susan B. Rempe · 2016

This review focuses on the striking recent progress in solving for hydrophobic interactions between small inert molecules. We discuss several new understandings. Firstly, the _inverse _temperature phe…

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Chemistry Preprint PDF DOI

Assessing the Performance of the Diffusion Monte Carlo Method as Applied to the Water Monomer, Dimer, and Hexamer

Joel D. Mallory, Sandra E. Brown, Vladimir A. Mandelshtam · 2015

The Diffusion Monte Carlo (DMC) method is applied to the water monomer, dimer, and hexamer, using q-TIP4P/F, one of the most simple, empirical water models with flexible monomers. The bias in the time…

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Chemistry Preprint PDF DOI

Time-resolved spectroscopy in time dependent density functional theory: An exact condition

Johanna I. Fuks, Kai Luo, Ernesto D. Sandoval, Neepa T. Maitra · 2014

A fundamental property of a quantum system driven by an external field is that when the field is turned off the positions of its response frequencies are independent of the time at which the field is …

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