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Showing 42 results for "guy david" in Chemistry
Chemistry Preprint PDF DOI

Permeation of hydrogen across graphdiyne: molecular dynamics vs. quantum simulations and role of membrane motion

Mateo Rodriguez, Jose Campos-Martinez, Marta I. Hernandez ยท 2026

Previous research based on electronic structure calculations and molecular dynamics (MD) simulations have demonstrated that graphdiyne (GDY) is a very suitable two-dimensional membrane for the separatโ€ฆ

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Chemistry Preprint PDF DOI

Viscosity as a Smoking Gun for Complex Formation in Solution: Fe$^{2+}$ and Mg$^{2+}$ Chlorides as Examples

Amrita Goswami, Samuel Blazquez, Lucia Fernandez-Sedano, Eva Gonzalez Noya, Hannes Jonsson, Jacobo Troncoso, Carlos Vega ยท 2026

Electrolyte solutions at high concentration are indispensable and yet poorly understood. In particular, the extent of speciation -- the formation of complexes composed of multiple species -- in concenโ€ฆ

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Chemistry Preprint PDF DOI

HBAT 2: A Python Package to Analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures

Abhishek Tiwari ยท 2026

Hydrogen bonds and other non-covalent interactions play a crucial role in maintaining the structural integrity and functionality of biological macromolecules such as proteins and nucleic acids. Accuraโ€ฆ

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Chemistry Preprint PDF DOI

Revealing Light-Driven Dynamics at Nanostructured Solid-Liquid Interfaces with In-Situ SHG

Tarique Anwar, Diana DallAglio, Milad Sabzehparvar, Giulia Tagliabue ยท 2025

Light and heat are key drivers of interfacial chemistry at solid-liquid boundaries, governing fundamental processes in sustainable energy conversion systems such as photoelectrochemical and hydrovoltaโ€ฆ

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Chemistry Preprint PDF DOI

Electrochemical Thermodynamics, Kinetics, and Hysteresis in Ener-gy Materials: Focusing on the Solid Side

Keyvan Malaie ยท 2025

Bulk electrochemical phase transitions (EPTs) are the cornerstone of most modern electro-chemical technologies, underlying many energy storage and electrocatalytic systems. Nonetheless, the fundamentaโ€ฆ

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Chemistry Preprint PDF DOI

Surface charge pattern: impact on vibrational spectroscopy and physics of charged interfaces

Wanlin Chen, Marie-Pierre Gaigeot, Simone Pezzotti ยท 2025

Surface specific vibrational spectroscopies revolutionized the study of charged interfaces, by sensitively probing water's response in the electric double layer (EDL) and correlating it with surface cโ€ฆ

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Chemistry Preprint PDF DOI

Extending Ambient Pressure X-ray Photoelectron Spectroscopy to Plasma Studies: A novel and flexible plasma gun approach

Yang Gu, Zhehao Qiu, Shui Lin, Yong Han, Hui Zhang, Zhi Liu, Jun Cai ยท 2025

The characterization of the electronic structure and chemical states of gases, solids, and liquids can be effectively performed using ambient pressure X-ray photoelectron spectroscopy (AP-XPS). Howeveโ€ฆ

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Chemistry Preprint PDF DOI

PACKMOL- GUI: An All-in-One VMD Interface for Efficient Molecular Packing

Jian Huang, Chenchen Wu, Xiner Yang, Zaixing Yang, Shengtang Liu, Gang Yu ยท 2024

PACKMOL is a widely utilized molecular modeling tool within the computational chemistry community. However, its perceivable advantages have been impeded by the long-standing lack of a robust open-sourโ€ฆ

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Chemistry Preprint PDF DOI

DeePMD-kit v2: A software package for Deep Potential models

Jinzhe Zeng, Duo Zhang, Denghui Lu, Pinghui Mo, Zeyu Li, Yixiao Chen, Marian Rynik, Li'ang Huang, Ziyao Li, Shaochen Shi, Yingze Wang, Haotian Ye, Ping Tuo, Jiabin Yang, Ye Ding, Yifan Li, Davide Tisi, Qiyu Zeng, Han Bao, Yu Xia, Jiameng Huang, Koki Muraoka, Yibo Wang, Junhan Chang, Fengbo Yuan, Sigbj{o}rn L{o}land Bore, Chun Cai, Yinnian Lin, Bo Wang, Jiayan Xu, Jia-Xin Zhu, Chenxing Luo, Yuzhi Zhang, Rhys E. A. Goodall, Wenshuo Liang, Anurag Kumar Singh, Sikai Yao, Jingchao Zhang, Renata Wentzcovitch, Jiequn Han, Jie Liu, Weile Jia, Darrin M. York, Weinan E, Roberto Car, Linfeng Zhang, Han Wang ยท 2023

DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics simulations using machine learning potentials (MLP) known as Deep Potential (DP) models. This package, which wโ€ฆ

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Chemistry Preprint PDF DOI

A systematic study of the valence electronic structure of cyclo(Gly-Phe), cyclo(Trp-Tyr) and cyclo(Trp-Trp) dipeptides in gas phase

Elena Molteni, Giuseppe Mattioli, Paola Alippi, Lorenzo Avaldi, Paola Bolognesi, Laura Carlini, Federico Vismarra, Yingxuan Wu, Rocio Borrego Varillas, Mauro Nisoli, Manjot Singh, Mohammadhassan Valadan, Carlo Altucci, Robert Richter, Davide Sangalli ยท 2021

The electronic energy levels of cyclo(Glycine-Phenylalanine), cyclo(Tryptophan-Tyrosine) and cyclo(Tryptophan-Tryptophan) dipeptides are investigated with a joint experimental and theoretical approachโ€ฆ

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Chemistry Preprint PDF DOI

Beyond gold nanoparticles cytotoxicity: potential to impair metastasis hallmarks

Jenifer Pendiuk Goncalves, Anderson Fraga da Cruz, Heloise Ribeiro de Barros, Beatriz Santana Borges, Lia Carolina Almeida Soares de Medeiros, Maurilio Jose Soares, Mayara Padovan dos Santos, Marco Tadeu Grassi, Anil Chandra, Loretta Laureana del Mercato, Gustavo Rodrigues Rossi, Edvaldo da Silva Trindade, Izabel Cristina Riegel Vidotti, Carolina Camargo de Oliveira ยท 2021

This study aimed to investigate the antitumor effect of ultrasmall gold nanoparticles (AuNPs), around 3 nm, stabilized by the anionic polysaccharide gum arabic (GA-AuNPs). The focus was downregulationโ€ฆ

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Chemistry Preprint PDF DOI

A new approach to separate hydrogen from carbon dioxide using graphdiyne-like membrane

Parham Rezaee, Hamid Reza Naeij ยท 2020

In order to separate a mixture of hydrogen ($H_2$) and carbon dioxide ($CO_2$) gases, we have proposed a new approach employing the graphdiyne-like membrane (GDY-H) using density functional theory (DFโ€ฆ

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Chemistry Preprint PDF DOI

Comment on: Is the Hydrated Electron Vertical Detachment Genuinely Bimodal?

Ruth Signorell ยท 2020

In a recent article, David Bartels addresses the issue of the band shape of the genuine binding energy spectrum of the hydrated electron. He essentially claims that the genuine binding energy of the hโ€ฆ

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Chemistry Preprint PDF DOI

Specifics about Specific Ion Adsorption from Heterodyne-Detected Second Harmonic Generation

Mavis D. Boamah, Paul E. Ohno, Emilie Lozier, Jacqueline Van Ardenne, Franz M. Geiger ยท 2019

Ion specific outcomes at aqueous interfaces remain among the most enigmatic phenomena in interfacial chemistry. Here, charged fused silica/water interfaces have been probed by homodyne- and heterodyneโ€ฆ

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Chemistry Preprint PDF DOI

Thermodynamics of Ion Separation by Electrosorption

Ali Hemmatifar, Ashwin Ramachandran, Kang Liu, Diego I. Oyarzun, Martin Z. Bazant, Juan G. Santiago ยท 2018

We present a simple, top-down approach for the calculation of minimum energy consumption of electrosorptive ion separation using variational form of the (Gibbs) free energy. We focus and expand on theโ€ฆ

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Chemistry Preprint PDF DOI

Glycine Zwitterion Stabilized by Four Water Molecules

Byeong June Min ยท 2017

We performed plane wave density functional theory calculations to survey the potential energy surface of neutral glycine (GlyNE) and its zwitterion (GlyZW) solvated by up to four water molecules. Our โ€ฆ

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Chemistry Preprint PDF DOI

Solvation in atomic liquids: connection between Gaussian field theory and density functional theory

V. Sergiievskyi, M. Levesque, B. Rotenberg, D. Borgis ยท 2017

For the problem of molecular solvation, formulated as a liquid submitted to the external potential field created by a molecular solute of arbitrary shape dissolved in that solvent, we draw a connectioโ€ฆ

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Chemistry Preprint PDF DOI

A New Energy Ordering of Gas Phase Glycine and the Dipole Moment via Plane-wave Density Functional Theory Calculations

Byeong June Min ยท 2017

The abundance of glycine (Gly), the simplest amino acid, in meteorites leads us to the next question about its extraterrestrial origin. However, astronomers have not yet found glycine signature in intโ€ฆ

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Chemistry Preprint PDF DOI

An experimental and theoretical investigation of the C(1D) + D2 reaction

Kevin M. Hickson, Yury V. Suleimanov ยท 2016

In a previous joint experimental and theoretical study of the barrierless chemical reaction C(1D) + H2 at low temperatures (300-50 K) [K. M. Hickson, J.-C. Loison, H. Guo, Y. V. Suleimanov, J. Phys. Cโ€ฆ

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Chemistry Preprint PDF DOI

Pitfalls of exergy analysis

Petr Vagner, Michal Pavelka, Frantisek Marsik ยท 2016

The well-known Gouy-Stodola theorem states that a device produces maximum useful power when working reversibly, that is with no entropy production inside the device. This statement then leads to a metโ€ฆ

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