Research
Research
Research
Research
55+ open-access research outputs.
Expired functional drinks have great valorisation potential due to the high concentration of organic molecules present. However, detailed information of the resources in these expired functional drink…
This paper presents a physics-aware cyberphysical resilience framework for radial microgrids under coordinated cyberattacks. The proposed approach models the attacker through a hypergraph neural netwo…
Designing mutations to optimize protein thermostability remains challenging due to the complex relationship between sequence variations, structural dynamics, and thermostability, often assessed by \de…
CD8+ "killer" T cells and CD4+ "helper" T cells play a central role in the adaptive immune system by recognizing antigens presented by Major Histocompatibility Complex (pMHC) molecules via T Cell Rece…
The Holographic Interference Surface (HIS) opens up a new prospect for building a more cost-effective wireless communication architecture by performing Radio Frequency (RF) domain signal processing. I…
De novo peptide sequencing is a fundamental computational technique for ascertaining amino acid sequences of peptides directly from tandem mass spectrometry data, eliminating the need for reference da…
Predicting protein function from sequence is a central challenge in computational biology. While existing methods rely heavily on structured ontologies or similarity-based techniques, they often lack …
Proteins play crucial roles in biological processes, with therapeutic peptides emerging as promising pharmaceutical agents. They allow for new possibilities to leverage target binding sites that were …
Efficient multiple setpoint tracking can enable advanced biotechnological applications, such as maintaining desired population levels in co-cultures for optimal metabolic division of labor. In this st…
Embodied AI is transforming how AI systems interact with the physical world, yet existing datasets are inadequate for developing versatile, general-purpose agents. These limitations include a lack of …
Motivated by the omnipresence of hierarchical structures in many real-world applications, this study delves into the intricate realm of bi-level games, with a specific focus on exploring local Stackel…
We propose an adaptive optimization algorithm for solving unconstrained scaled gradient flow problems that achieves fast convergence by controlling the optimization trajectory shape and the discretiza…
We consider the problem of recovering the three-dimensional atomic structure of a flexible macromolecule from a heterogeneous cryo-EM dataset. The dataset contains noisy tomographic projections of the…
Predicting the effect of mutations in proteins is one of the most critical challenges in protein engineering; by knowing the effect a substitution of one (or several) residues in the protein's sequenc…
We introduce Bi-GNN for modeling biological link prediction tasks such as drug-drug interaction (DDI) and protein-protein interaction (PPI). Taking drug-drug interaction as an example, existing method…
This work presents a new meta-heuristic approach to model structure selection of polynomial NARX models. In this respect, the technique penalizes the models based on the individual contribution of eac…
This paper proposes small tree-width graph decomposition computational protein design CFN instances defined according to the model [1] with protocol defined by Simononcini et al [2] . The proteins use…
Proteomics is the large-scale analysis of the proteins. The common method for identifying proteins and characterising their amino acid sequences is to digest the proteins into peptides, analyse the pe…
Proteins are the main workhorses of biological functions in a cell, a tissue, or an organism. Identification and quantification of proteins in a given sample, e.g. a cell type under normal/disease con…
We revisit the problem of protein structure determination from geometrical restraints from NMR, using convex optimization. It is well-known that the NP-hard distance geometry problem of determining at…
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