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๐Ÿ” jongwon kim ๐Ÿ“‚ Chemistry
Showing 241 results for "jongwon kim" in Chemistry
Chemistry Preprint PDF DOI

The Great Chicken-and-Egg of Chemistry: Bonding vs. Stability Revisited

Cherif F. Matta ยท 2026

The chemical bond is a central organizing concept in chemistry, yet it is absent from the molecular Hamiltonian and no "bond operator" exists. Bonding is therefore not a primitive physical entity but โ€ฆ

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Chemistry Preprint PDF DOI

A new framework for atom-resolved decomposition of second-harmonic generation in nonlinear-optical crystals

YingXing Cheng, Congwei Xie, Zhihua Yang, Shili Pan ยท 2026

In this work, we develop a new framework for computing atom-resolved contributions to optical properties based on atoms-in-molecules (AIM) schemes. The formalism is independent of the specific AIM metโ€ฆ

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Chemistry Preprint PDF DOI

Molecular dynamics simulation of high slip flow of water confined between graphene nanochannels at experimentally accessible strain rates

Carmelo Civello, Luca Maffioli, Edward Smith, James Ewen, Peter Daivis, Daniele Dini, Billy Todd ยท 2026

The transient time correlation function method (TTCF) has emerged as a powerful methodology for accurately probing systems at low shear rates. In the present study, TTCF was used to evaluate the shearโ€ฆ

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Chemistry Preprint PDF DOI

Semi-Local Exchange-Correlation Approximations in Density Functional Theory

Fabien Tran, Susi Lehtola, Stefano Pittalis, Miguel A. L. Marques ยท 2026

Density functional theory is the workhorse of modern electronic structure calculations, with wide-ranging applications in chemistry, physics, materials science, and machine learning. At its heart liesโ€ฆ

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Chemistry Preprint PDF DOI

Refinement and Performance Benchmark for Range-Separated Water Force Field

Qian Gao, Junmin Chen, Kuang Yu ยท 2026

In our previous work, we developed a CCSD(T)-level range-separated water force field that combines the power of physics-driven and machine learning models. However, it was found that expensive CCSD(T)โ€ฆ

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Chemistry Preprint PDF DOI

onepot CORE -- an enumerated chemical space to streamline drug discovery, enabled by automated small molecule synthesis and AI

Andrei S. Tyrin, Brandon Wang, Manuel Munoz, Samuel H. Foxman, Daniil A. Boiko ยท 2026

The design-make-test-analyze cycle in early-stage drug discovery remains constrained primarily by the "make" step: small-molecule synthesis is slow, costly, and difficult to scale or automate across dโ€ฆ

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Chemistry Preprint PDF DOI

Towards Efficient Dye-Sensitized Solar Cells: An economical Strategy for Prototypical Organic Dyes with Tailored Frontier Orbitals

Aditi Singh, Ram Dhari Pandey, Subrata Jana, Prasanjit Samal, Pawe{l} Tecmer, Szymon Smiga ยท 2026

The strategic incorporation of heteroatoms (N, O, and B) into organic dyes is a versatile and effective approach to enhance molecular properties. This approach is highly attractive for tailoring organโ€ฆ

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Chemistry Preprint PDF DOI

Interaction of Polymer of Intrinsic Microporosity PIM-1 with explosive analytes at the molecular level: Combined experiment and computational modelling

Salam Mohammed, Edward B. Ogugu, Ramakant Sharma, Dominic Taylor, Graeme Cooke, Neil McKeown, Glib Baryshnikov, Hans {AA}gren, Ifor D.W. Samuel, Graham A. Turnbull ยท 2025

This work investigates the molecular-level interactions of a fluorescent microporous polymer (PIM-1) with nitroaromatic explosives, in the context of thin film explosive sensors. Thin films of the PIMโ€ฆ

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Chemistry Preprint PDF DOI

Optimized tandem catalyst patterning for CO$_2$ reduction flow reactors

Jack Guo, Thomas Roy, Nitish Govindarajan, Joel B. Varley, Jonathan Raisin, Jinyoung Lee, Ji-Wook Jang, Dong Un Lee, Thomas F. Jaramillo, Tiras Y. Lin ยท 2025

Tandem catalysis involves two or more catalysts arranged in proximity within a single reaction vessel, with the aim of synergistically aligning the catalysts' reaction pathways to maximize overall sysโ€ฆ

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Chemistry Preprint PDF DOI

Shadow Molecular Dynamics for Flexible Multipole Models

Rae A. Corrigan Grove, Robert Stanton, Michael E. Wall, Anders M. N. Niklasson ยท 2025

Shadow molecular dynamics provide an efficient and stable atomistic simulation framework for flexible charge models with long-range electrostatic interactions. While previous implementations have beenโ€ฆ

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Chemistry Preprint PDF DOI

WaveMixings.jl: a Julia package for performing on-the-fly time-resolved nonlinear electronic spectra from quasi-classical trajectories

Luis Vasquez, Sebastian Pios, Lipeng Chen, Zhenggang Lan, Wolfgang Domcke, Maxim Gelin ยท 2025

We present an efficient numerical implementation of the quasi-classical doorway-window approximation, specifically designed for on-the-fly simulations of time-resolved nonlinear spectroscopic signals โ€ฆ

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Chemistry Preprint PDF DOI

CHEMSMART: Chemistry Simulation and Modeling Automation Toolkit for High-Efficiency Computational Chemistry Workflows

Xinglong Zhang, Huiwen Tan, Jingyi Liu, Zihan Li, Lewen Wang, Benjamin W. J. Chen ยท 2025

CHEMSMART (Chemistry Simulation and Modeling Automation Toolkit) is an open-source, Python-based framework designed to streamline quantum chemistry workflows for homogeneous catalysis and molecular moโ€ฆ

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Chemistry Preprint PDF DOI

Best practices for nonadiabatic molecular dynamics simulations

Antonio Prlj, Jack T. Taylor, Jiri Janos, Elise Lognon, Daniel Hollas, Petr Slavicek, Federica Agostini, Basile F. E. Curchod ยท 2025

Nonadiabatic molecular dynamics simulations aim to describe the coupled electron-nuclear dynamics of molecules in excited electronic states. These simulations have been applied to understand a plethorโ€ฆ

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Chemistry Preprint PDF DOI

Open Molecular Crystals 2025 (OMC25) Dataset and Models

Vahe Gharakhanyan, Luis Barroso-Luque, Yi Yang, Muhammed Shuaibi, Kyle Michel, Daniel S. Levine, Misko Dzamba, Xiang Fu, Meng Gao, Xingyu Liu, Haoran Ni, Keian Noori, Brandon M. Wood, Matt Uyttendaele, Arman Boromand, C. Lawrence Zitnick, Noa Marom, Zachary W. Ulissi, Anuroop Sriram ยท 2025

The development of accurate and efficient machine learning models for predicting the structure and properties of molecular crystals has been hindered by the scarcity of publicly available datasets of โ€ฆ

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Chemistry Preprint PDF DOI

Machine learning prediction of a chemical reaction over 8 decades of energy

Daniel Julian, Jesus Perez-Rios ยท 2025

Recent progress in machine learning has sparked increased interest in utilizing this technology to predict the outcomes of chemical reactions. The ultimate aim of such endeavors is to develop a univerโ€ฆ

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Chemistry Preprint PDF DOI

A Scalable and Quantum-Accurate Foundation Model for Biomolecular Force Field via Linearly Tensorized Quadrangle Attention

Qun Su, Kai Zhu, Qiaolin Gou, Jintu Zhang, Renling Hu, Yurong Li, Yongze Wang, Hui Zhang, Ziyi You, Linlong Jiang, Yu Kang, Jike Wang, Chang-Yu Hsieh, Tingjun Hou ยท 2025

Accurate atomistic biomolecular simulations are vital for disease mechanism understanding, drug discovery, and biomaterial design, but existing simulation methods exhibit significant limitations. Clasโ€ฆ

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Chemistry Preprint PDF DOI

Foundation Models for Atomistic Simulation of Chemistry and Materials

Eric C.-Y. Yuan, Yunsheng Liu, Junmin Chen, Peichen Zhong, Sanjeev Raja, Tobias Kreiman, Santiago Vargas, Wenbin Xu, Martin Head-Gordon, Chao Yang, Samuel M. Blau, Bingqing Cheng, Aditi Krishnapriyan, Teresa Head-Gordon ยท 2025

Given the power of large language and large vision models, it is of profound and fundamental interest to ask if a foundational model based on data and parameter scaling laws and pre-training strategieโ€ฆ

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Chemistry Preprint PDF DOI

A Fast and Accurate Semi-Empirical Approach for Hydrogen-Exchange Kinetic Isotope Effect Evaluation

Mikhail Rudenko, Artem Eliseev, Artem Mitrofanov, Stepan Kalmykov ยท 2025

The kinetic isotope effect (KIE) is essential in various chemical applications from reaction mechanism studies to tritium removal from water. Traditional KIE evaluation relies on experimental measuremโ€ฆ

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Chemistry Preprint PDF DOI

Understanding the core limitations of second-order correlation-based functionals through: functional, orbital, and eigenvalue-driven analysis

Aditi Singh, Eduardo Fabiano, Szymon Smiga ยท 2025

Density Functional Theory has long struggled to obtain the exact exchange-correlational (XC) functional. Numerous approximations have been designed with the hope of achieving chemical accuracy. Howeveโ€ฆ

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Chemistry Preprint PDF DOI

DeePMD-kit v3: A Multiple-Backend Framework for Machine Learning Potentials

Jinzhe Zeng, Duo Zhang, Anyang Peng, Xiangyu Zhang, Sensen He, Yan Wang, Xinzijian Liu, Hangrui Bi, Yifan Li, Chun Cai, Chengqian Zhang, Yiming Du, Jia-Xin Zhu, Pinghui Mo, Zhengtao Huang, Qiyu Zeng, Shaochen Shi, Xuejian Qin, Zhaoxi Yu, Chenxing Luo, Ye Ding, Yun-Pei Liu, Ruosong Shi, Zhenyu Wang, Sigbj{o}rn L{o}land Bore, Junhan Chang, Zhe Deng, Zhaohan Ding, Siyuan Han, Wanrun Jiang, Guolin Ke, Zhaoqing Liu, Denghui Lu, Koki Muraoka, Hananeh Oliaei, Anurag Kumar Singh, Haohui Que, Weihong Xu, Zhangmancang Xu, Yong-Bin Zhuang, Jiayu Dai, Timothy J. Giese, Weile Jia, Ben Xu, Darrin M. York, Linfeng Zhang, Han Wang ยท 2025

In recent years, machine learning potentials (MLPs) have become indispensable tools in physics, chemistry, and materials science, driving the development of software packages for molecular dynamics (Mโ€ฆ

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