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🔍 proteins 📂 Computer Science
Showing 2570 results for "proteins" in Computer Science
Computer Science Preprint PDF DOI

ReVo: A Cross-Layer Reliable Volumetric Videoconferencing System

Ankur Aditya, Diptyaroop Maji, Lingdong Wang, Bhavya Ramakrishna, Ramesh Sitaraman, Prashant Shenoy · 2026

Volumetric videoconferencing enables immersive six Degrees of Freedom interactions by jointly transmitting visual appearance and 3D geometry. However, delivering volumetric video over today's networks…

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Computer Science Preprint PDF DOI

Strategically Robust Aggregative Games

Andreas Feik, Nicolas Lanzetti, Saverio Bolognani, Florian Dorfler, Dario Paccagnan · 2026

In many multiagent settings, such as electric vehicle charging and traffic routing, agents must make decisions in the face of uncertain behavior exhibited by others. Often, this uncertainty arises fro…

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Computer Science Preprint PDF DOI

Proteus: Shapeshifting Desktop Visualizations for Mobile via Multi-level Intelligent Adaptation

Can Liu, Sizhe Cheng, Feng Liang, Zhibang Jiang, Lingru Huang, Kavinda Athapaththu, Yong Wang · 2026

With the rise of mobile-first consumption, users increasingly engage with data visualizations on mobile devices. However, the vast majority of existing visualizations are originally authored for deskt…

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Computer Science Preprint PDF DOI

MediaGraph: A Network Theoretic Framework to Analyze Reporting Preferences in Indian News Media

Aditya Bali, Rupsha, Vidur Kaushik, Anirban Sen · 2026

We present MediaGraph, a network-theoretic framework for analyzing reporting preferences in news media through entity co-occurrence networks. Using articles from four Indian news-sources, two mainstre…

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Computer Science Preprint PDF DOI

Calibrated Abstention for Reliable TCR--pMHC Binding Prediction under Epitope Shift

Arman Bekov, Timur Bekzhanov, Bekzat Sadykov · 2026

Predicting T-cell receptor (TCR)--peptide-MHC (pMHC) binding is central to vaccine design and T-cell therapy, yet deployed models frequently encounter epitopes unseen during training, causing silent o…

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Computer Science Preprint PDF DOI

RCSB PDB AI Help Desk: retrieval-augmented generation for protein structure deposition support

Vivek Reddy Chithari, Jasmine Y. Young, Irina Persikova, Yuhe Liang, Gregg V. Crichlow, Justin W. Flatt, Sutapa Ghosh, Brian P. Hudson, Ezra Peisach, Monica Sekharan, Chenghua Shao, Stephen K. Burley · 2026

Motivation: Structural Biologists have contributed more than 245,000 experimentally determined three-dimensional structures of biological macromolecules to the Protein Data Bank (PDB). Incoming data a…

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Computer Science Preprint PDF DOI

Entangled happily ever after: Wedding reception seating mapped to classical and quantum optimizers

Karie A. Nicholas, Vikram Khipple Mulligan · 2026

Although optimization is one of the most promising applications of quantum computers, the development of effective optimization strategies requires real-world test cases. When planning our recent wedd…

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Computer Science Preprint PDF DOI

A Relay a Day Keeps the AirTag Away: Practical Relay Attacks on Apple's AirTags

Gabriel K. Gegenhuber, Leonid Liadveikin, Florian Holzbauer, Sebastian Strobl · 2026

Apple AirTags use Apple's Find My network: when nearby iDevices detect a lost tag, they anonymously forward an encrypted location report to Apple, which the tag's owner can then fetch to locate the it…

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Computer Science Preprint PDF DOI

A Physically-Informed Subgraph Isomorphism Approach to Molecular Docking Using Quantum Annealers

Francesco Micucci, Matteo Barbieri, Gabriella Bettonte, Domenico Bonanni, Anita Camillini, Anna Fava, Daniele Gregori, Andrea R. Beccari, Gianluca Palermo · 2026

Molecular docking is a crucial step in the development of new drugs as it guides the positioning of a small molecule (ligand) within the pocket of a target protein. In the literature, a feasibility st…

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Computer Science Preprint PDF DOI

DRIFT: Harnessing Inherent Fault Tolerance for Efficient and Reliable Diffusion Model Inference

Jinqi Wen, Tong Xie, Runsheng Wang, Meng Li · 2026

Diffusion model deployment has been suffering from high energy consumption and inference latency despite its superior performance in visual generation tasks. Dynamic voltage and frequency scaling (DVF…

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Computer Science Preprint PDF DOI

On the Capacity of Sequences of Coloring Channels

Wenjun Yu, Moshe Schwartz · 2026

A single coloring channel is defined by a subset of letters it allows to pass through, while deleting all others. A sequence of coloring channels provides multiple views of the same transmitted letter…

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Computer Science Preprint PDF DOI

BRASP: Boolean Range Queries over Encrypted Spatial Data with Access and Search Pattern Privacy

Jing Zhang, Ganxuan Yang, Yifei Yang, Siqi Wen, Zhengyang Qiu · 2026

Searchable Encryption (SE) enables users to query outsourced encrypted data while preserving data confidentiality. However, most efficient schemes still leak the search pattern and access pattern, whi…

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Computer Science Preprint PDF DOI

SAFE: Spatially-Aware Feedback Enhancement for Fault-Tolerant Trust Management in VANETs

Ipek Abas{i}keles Turgut · 2026

Trust management in VANETs is critically important for secure communication between vehicles. In event-based trust systems, vehicles broadcast the events they witness to their surroundings and send fe…

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Computer Science Preprint PDF DOI

Making Room for AI: Multi-GPU Molecular Dynamics with Deep Potentials in GROMACS

Luca Pennati, Andong Hu, Ivy Peng, Lukas Mullender, Stefano Markidis · 2026

GROMACS is a de-facto standard for classical Molecular Dynamics (MD). The rise of AI-driven interatomic potentials that pursue near-quantum accuracy at MD throughput now poses a significant challenge:…

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Computer Science Preprint PDF DOI

Towards Securing IIoT: An Innovative Privacy-Preserving Anomaly Detector Based on Federated Learning

Samira Kamali Poorazad, Chafika Benzaid, Tarik Taleb · 2026

In the light of the growing connectivity and sensitivity of industrial data, cyberattacks and data breaches are becoming more common in the Industrial Internet of Things (IIoT). To cope with such th…

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Computer Science Preprint PDF DOI

Mechanism and Communication Co-Design for Differentially Private Energy Sharing

Yingshuo Gu, Xi Weng, Yue Chen · 2026

Integrating distributed energy resources (DERs) is a critical step toward addressing the global climate crisis. This transformation has driven the transition from traditional consumers to prosumers an…

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Computer Science Preprint PDF DOI

Fair Aggregation in Virtual Power Plants

Liudong Chen, Hyemi Kim, Adam N. Elmachtoub, Bolun Xu · 2026

A virtual power plant (VPP) is operated by an aggregator that acts as a market intermediary, aggregating consumers to participate in wholesale power markets. By setting incentive prices, the aggregato…

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Computer Science Preprint PDF DOI

Hotspot-Aware Scheduling of Virtual Machines with Overcommitment for Ultimate Utilization in Cloud Datacenters

Jiaxi Wu, Pavel Popov, Wenquan Yang, Andrei Gudkov, Elizaveta Ponomareva, Xinming Han, Yunzhe Qiu, Jie Song, Stepan Romanov · 2026

We address the problem of under-utilization of resources in datacenters during cloud operations, specifically focusing on the challenge of online virtual machine (VM) scheduling. Rather than following…

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Computer Science Preprint PDF DOI

Phyelds: A Pythonic Framework for Aggregate Computing

Gianluca Aguzzi, Davide Domini, Nicolas Farabegoli, Mirko Viroli · 2026

Aggregate programming is a field-based coordination paradigm with over a decade of exploration and successful applications across domains including sensor networks, robotics, and IoT, with implementat…

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Computer Science Preprint PDF DOI

Uncovering Relationships between Android Developers, User Privacy, and Developer Willingness to Reduce Fingerprinting Risks

Alex Berke, Guliz Seray Tuncay, Michael Specter, Mihai Christodorescu · 2026

The major mobile platforms, Android and iOS, have introduced changes that restrict user tracking to improve user privacy, yet apps continue to covertly track users via device fingerprinting. We study …

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