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🔍 computing methodologies 📂 Chemistry
Showing 1029 results for "computing methodologies" in Chemistry
Chemistry Preprint PDF DOI

Coupled cluster theory for positron binding in anions and polyatomic molecules

Rosario R. Riso, Jan Haakon M. Trabski, Federico Rossi, Dermot Green, Henrik Koch · 2026

We present the positron coupled cluster singles and doubles (POS-CCSD) method to calculate positron binding energies in molecules. This framework treats electrons and positrons on an equal footing and…

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Chemistry Preprint PDF DOI

Isotope Effects in 2D correlation infrared Spectra of Water: HEOM Analysis of Molecular Dynamics-Based Machine Learning Models

Kwanghee Park, Ryotaro Hoshino, Yoshitaka Tanimura · 2026

We model, simulate, and analyze the intramolecular modes of liquid H2O and D2O to elucidate how energy excitation, relaxation, and vibrational dephasing interplay through anharmonic mode-mode coupling…

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Chemistry Preprint PDF DOI

TENSO: Software Package for Numerically Exact Open Quantum Dynamics Based on Efficient Tree Tensor Network Decomposition of the Hierarchical Equations of Motion

Juan C. Rodriguez Betancourt, Michelle C. Anderson, Luchang Niu, Xinxian Chen, Ignacio Franco · 2026

TENSO is a versatile and powerful open-source software package for numerically exact simulations of the dynamics of quantum systems immersed in structured thermal environments. It is based on a tree t…

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Chemistry Preprint PDF DOI

Extended Lagrangian molecular dynamics on vibronic surfaces in the nuclear-electronic orbital framework

Joseph A. Dickinson, Mathew Chow, Eno Paenurk, Sharon Hammes-Schiffer · 2026

Proton transfer is central to many processes of chemical interest. The simulation of proton transfer dynamics requires the inclusion of nuclear quantum effects, such as zero-point energy, nuclear delo…

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Chemistry Preprint PDF DOI

Auto-WHATMD : Automated Wasserstein-based High-dimensional feature extraction Analysis of Trajectories from Molecular Dynamics

Sosuke Asano, Ikki Yasuda, Katsuhiro Endo, Yoshinori Hirano, Kenji Yasuoka · 2026

Comparing multiple protein systems with variation such as different binding ligands or mutations, and understanding their effects is one of the objectives in molecular dynamics simulations. Representa…

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Chemistry Preprint PDF DOI

Adaptive tensor train metadynamics for high-dimensional free energy exploration

Nils E. Strand, Siyao Yang, Yuehaw Khoo, Aaron R. Dinner · 2026

A key challenge for molecular dynamics simulations is efficient exploration of free energy landscapes over relevant collective variables (CV). Common methods for enhancing sampling become prohibitivel…

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Chemistry Preprint PDF DOI

Reaction-Level Consistency within the Variational Quantum Eigensolver: Homodesmotic Ring Strain Energies of Cyclic Hydrocarbons

L. Roy, M. Sarkar, M. Tewari, A. Kumar, M. Paranjothy · 2026

Simulation of chemical reactions on quantum computing platforms using quantum classical hybrid algorithms such as the Variational Quantum Eigensolver (VQE) is challenged by the need for a reaction con…

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Chemistry Preprint PDF DOI

Quantum-corrected NMR crystallography at scale

Matthias Kellner, Ruben Rodriguez-Madrid, Jacob B. Holmes, Victor Paul Principe, Lyndon Emsley, Michele Ceriotti · 2026

Structure determination by chemical-shift-driven NMR crystallography relies on comparing chemical shieldings measured in solid-state NMR experiments with simulations. However, computational cost limit…

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Chemistry Preprint PDF DOI

The Angular Localization Function (ALF): a practical tool to measure solvent angular order with Molecular Density Functional Theory

Maiwenn Souetre, Benjamin Rotenberg, Guillaume Jeanmairet · 2026

Molecular density functional theory is a powerful technique for efficiently computing the spatially and orientationally dependent equilibrium density of a molecular solvent around an arbitrary solute.…

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Chemistry Preprint PDF DOI

Structure-resolved free energy estimation of the 38-atom Lennard Jones cluster via population annealing

Akie Kowaguchi, Koji Hukushima · 2026

We systematically investigate the thermodynamic landscape of the 38-atom Lennard--Jones cluster LJ$_{38}$ using Population Annealing (PA), a method suited for systems with challenging double-funnel en…

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Chemistry Preprint PDF DOI

Photoluminescence Line Shapes of Nanocrystals: Contributions from First- and Second-Order Vibronic Couplings

Kaiyue Peng, Bokang Hou, Kailai Lin, Caroline Chen, Hendrik Utzat, Eran Rabani · 2026

We present a microscopic, parameter-free approach for computing the photoluminescence spectra of a single semiconductor nanocrystal. The method derives exciton-phonon coupling directly from the semi-e…

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Chemistry Preprint PDF DOI

Tensor Hypercontraction Error Correction Using Regression

Ishna Satyarth, Eric C. Larson, Devin A. Matthews · 2026

Wavefunction-based quantum methods are some of the most accurate tools for predicting and analyzing the electronic structure of molecules, in particular for accounting for dynamical electron correlati…

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Chemistry Preprint PDF DOI

Molecular g-Tensors From Spin-Orbit Quasidegenerate N-electron Valence Perturbation Theory: Benchmarks, Intruder-State Mitigation, and Practical Guidelines

Nicholas Yiching Chiang, Rajat Majumder, Alexander Yu. Sokolov · 2026

Accurate prediction of molecular g-tensors for open-shell systems requires a balanced treatment of multireference electron correlation and relativistic spin-orbit coupling. Here, we develop and benchm…

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Chemistry Preprint PDF DOI

Efficient Calculation of Absorption Spectra of Platinum Complexes Used as Luminescent Probes for Cancer Detection

Lena T. T. Nguyen, Ernst D. Larsson, Kajsa M. F. Niklasson, Erna K. Wieduwilt, Erik D. Hedeg{aa}rd · 2026

Despite major advances in oncology, many chemotherapeutic agents still cause severe side effects that reduce quality of life, motivating new approaches for early detection and targeted elimination of …

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Chemistry Preprint PDF DOI

Fragment-Based Configuration Interaction: Towards a Unifying Description of Biexcitonic Processes in Molecular Aggregates

Johannes E. Adelsperger, Coen de Graaf, Merle I. S. Rohr · 2026

Biexcitonic states govern singlet fission, triplet-triplet and exciton-exciton annihilation, yet a unified understanding of how these processes compete within a shared electronic manifold remains elus…

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Chemistry Preprint PDF DOI

Nuclear gradients from auxiliary-field quantum Monte Carlo and their application in geometry optimization and transition state search

Jo S. Kurian, Ankit Mahajan, Sandeep Sharma · 2026

In this article, we present a method for computing accurate and scalable nuclear forces within the phaseless auxiliary-field quantum Monte Carlo (AFQMC) framework. Our approach leverages automatic dif…

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Chemistry Preprint PDF DOI

Neural Quantum States Based on Selected Configurations

Marco Julian Solanki, Lexin Ding, Markus Reiher · 2026

Neural quantum states (NQS) provide a flexible and highly expressive parameterization of wave functions for strongly correlated problems in quantum chemistry. Despite rapid advances in network archite…

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Chemistry Preprint PDF DOI

Multilevel DFT Response Theory

Alberto Barlini, Julien Bloino, Henrik Koch, Tommaso Giovannini · 2026

We present a general computational protocol for the evaluation of extensive molecular response properties in complex environments within a polarizable quantum embedding framework. The approach extends…

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Chemistry Preprint PDF DOI

Generalized Path Reweighting and History-Dependent Free Energies

Titus S. van Erp, Daniel T. Zhang, Elias Wils, Sina Safaei, An Ghysels · 2026

Transition interface sampling (TIS) and replica exchange TIS (RETIS) are powerful methods for computing rates of rare events inaccessible to straightforward molecular dynamics (MD) simulations. Path r…

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Chemistry Preprint PDF DOI

Unified MPI Parallelization of Wave Function Methods: iCIPT2 as a Showcase

Qingpeng Wang, Ning Zhang, Wenjian Liu · 2026

The integration of quantum chemical methods with high-performance computing is indispensable for handling large systems with modest accuracy or even small systems but with high accuracy. Continuing wi…

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