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Showing 3637 results for "protein" in Computer Science · Preprint
Computer Science Preprint PDF DOI

Existence and Constructions of Strict Function-Correcting Codes with Data Protection

Charul Rajput, B. Sundar Rajan, Ragnar Freij-Hollanti, Camilla Hollanti · 2026

Function-correcting codes with data protection simultaneously protect both the data and a function of the data at distinct error-correction levels. When the function receives strictly stronger protect…

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Agent Name Service (ANS): A Proof-of-Concept Trust Layer for Secure AI Agent Discovery, Identity, and Governance in Kubernetes

Akshay Mittal, Elyson De La Cruz · 2026

Autonomous AI agent ecosystems require stronger mechanisms for secure discovery, identity verification, capability attestation, and policy governance. Current deployments frequently lack (1) uniform a…

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Computer Science Preprint PDF DOI

Secure Conformance Checking using Token-based Replay and Homomorphic Encryption

Luis-Armando Rodriguez-Flores, Luciano Garcia-Banuelos, Abel Armas-Cervantes, Astrid-Monserrat Rivera-Partida · 2026

Conformance checking, one of the main process mining operations, aims to identify discrepancies between a process model and an event log. The model represents the expected behaviour, whereas the event…

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Computer Science Preprint PDF DOI

Scalable Secure Biometric Authentication without Auxiliary Identifiers

Alexander Bienstock, Daniel Escudero, Antigoni Polychroniadou, Zhen Zeng, Pranav Bhat, Ashok Singal, Prashant Sharma, Manuela Veloso · 2026

The prevalence of biometric authentication has been on the rise due to its ease of use and elimination of weak passwords. To date, most biometric authentication systems have been designed for on-devic…

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Evaluation of Prompt Injection Defenses in Large Language Models

Priyal Deep, Shane Emmons, Amy Fox, Kyle Bacon, Kelley McAllister, Krisztian Flautner · 2026

LLM-powered applications routinely embed secrets in system prompts, yet models can be tricked into revealing them. We built an adaptive attacker that evolves its strategies over hundreds of rounds and…

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Computer Science Preprint PDF DOI

Proteus: Shapeshifting Desktop Visualizations for Mobile via Multi-level Intelligent Adaptation

Can Liu, Sizhe Cheng, Feng Liang, Zhibang Jiang, Lingru Huang, Kavinda Athapaththu, Yong Wang · 2026

With the rise of mobile-first consumption, users increasingly engage with data visualizations on mobile devices. However, the vast majority of existing visualizations are originally authored for deskt…

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Computer Science Preprint PDF DOI

Training Machine Learning Models on Encrypted Data: A Privacy-Preserving Framework using Homomorphic Encryption

Alexandre Marques, Beatriz Sa, Rui Botelho, Pedro Pinto · 2026

The use of Machine Learning (ML) for data-driven decision-making often relies on access to sensitive datasets, which introduces privacy challenges. Traditional encryption methods protect data at rest …

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Horizontal SCA Attacks on Binary kP Algorithms using Chevallier-Mames Atomic Blocks

Gerald Isheanesu Matungamire, Alkistis Aikaterini Sigourou, Gerrit Schrock, Zoya Dyka, Peter Langendoerfer, Ievgen Kabin · 2026

Scalar multiplication kP is the operation most frequently targeted in Elliptic Curve (EC) cryptosystems. To protect against single-trace Side-Channel Analysis (SCA) attacks, the atomicity principle an…

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Computer Science Preprint PDF DOI

Rethinking AI-Mediated Minority Support in Power-Imbalanced Group Decision-Making: From Anonymity To Authenticity

Soohwan Lee, Kyungho Lee · 2026

AI-mediated Communication (AIMC) systems increasingly aim to protect minority voices by anonymizing or proxying their input, but anonymity and authenticity are not the same construct. This position pa…

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A Stackelberg Model for Hybridization in Cryptography

Willie Kouam, Stefan Rass, Zahra Seyedi, Shahzad Ahmad, Eckhard Pfluegel · 2026

Similar to a strategic interaction between rational and intelligent agents, cryptography problems can be examined through the prism of game theory. In this setting, the agent aiming to protect a messa…

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PVAC: A RowHammer Mitigation Architecture Exploiting Per-victim-row Counting

Jumin Kim, Seungmin Baek, Hwayong Nam, Minbok Wi, Nam Sung Kim, Jung Ho Ahn · 2026

As DRAM scaling exacerbates RowHammer, DDR5 introduces per-row activation counting (PRAC) to track aggressor activity. However, PRAC indiscriminately increments counters on every activation -- includi…

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Enhancing Speaker Verification with Whispered Speech via Post-Processing

Magdalena Go{l}ebiowska, Piotr Syga · 2026

Speaker verification is a task of confirming an individual's identity through the analysis of their voice. Whispered speech differs from phonated speech in acoustic characteristics, which degrades the…

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Computer Science Preprint PDF DOI

Potentials and Pitfalls of Applying Federated Learning in Hardware Assurance

Gijung Lee, Wavid Bowman, Olivia Dizon-Paradis, Reiner Dizon-Paradis, Ronald Wilson, Damon Woodard, Domenic Forte · 2026

As microelectronics flourish and outsourcing of the design and manufacturing stages of integrated circuits (ICs) and printed circuit boards (PCBs) becomes the norm, microelectronics stakeholders must …

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TrEEStealer: Stealing Decision Trees via Enclave Side Channels

Jonas Sander, Anja Rabich, Nick Mahling, Felix Maurer, Jonah Heller, Qifan Wang, Thomas Eisenbarth, David Oswald · 2026

Today, machine learning is widely applied in sensitive, security-related, and financially lucrative applications. Model extraction attacks undermine current business models where a model owner sells m…

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AgenTEE: Confidential LLM Agent Execution on Edge Devices

Sina Abdollahi, Mohammad M Maheri, Javad Forough, Amir Al Sadi, Josh Millar, David Kotz, Marios Kogias, Hamed Haddadi · 2026

Large Language Model (LLM) agents provide powerful automation capabilities, but they also create a substantially broader attack surface than traditional applications due to their tight integration wit…

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The Open-Weight Paradox: Why Restricting Access to AI Models May Undermine the Safety It Seeks to Protect

Vinicius Santana Gomes · 2026

The governance of open-weight artificial intelligence (AI) models has been framed as a binary choice: openness as risk, restriction as safety. This paper challenges that framing, arguing that access r…

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Global Web, Local Privacy? An International Review of Web Tracking

Harry Yu, Patton Yin, Sebastian Zimmeck · 2026

Web tracking by ad networks, social networks, and other third parties is privacy-invasive. To protect users' privacy an increasing number of countries are adopting new privacy laws. However, a major r…

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From Vulnerable Data Subjects to Vulnerabilizing Data Practices: Navigating the Protection Paradox in AI-Based Analyses of Platformized Lives

Delfina S. Martinez Pandiani, Ella Streefkerk, Laurens Naudts, Paula Helm · 2026

This paper traces a conceptual shift from understanding vulnerability as a static, essentialized property of data subjects to examining how it is actively enacted through data practices. Unlike reflex…

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Computer Science Preprint PDF DOI

Calibrated Abstention for Reliable TCR--pMHC Binding Prediction under Epitope Shift

Arman Bekov, Timur Bekzhanov, Bekzat Sadykov · 2026

Predicting T-cell receptor (TCR)--peptide-MHC (pMHC) binding is central to vaccine design and T-cell therapy, yet deployed models frequently encounter epitopes unseen during training, causing silent o…

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RCSB PDB AI Help Desk: retrieval-augmented generation for protein structure deposition support

Vivek Reddy Chithari, Jasmine Y. Young, Irina Persikova, Yuhe Liang, Gregg V. Crichlow, Justin W. Flatt, Sutapa Ghosh, Brian P. Hudson, Ezra Peisach, Monica Sekharan, Chenghua Shao, Stephen K. Burley · 2026

Motivation: Structural Biologists have contributed more than 245,000 experimentally determined three-dimensional structures of biological macromolecules to the Protein Data Bank (PDB). Incoming data a…

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