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๐Ÿ” software ๐Ÿ“‚ Neuroscience
Showing 85 results for "software" in Neuroscience
Neuroscience Preprint PDF DOI

Goxpyriment: A Go Framework for Behavioral and Cognitive Experiments

Christophe Pallier, Julie Bonnaire, Marie-France Fourcade ยท 2026

We introduce `Goxpyriment', a new open-source software framework for programming behavioral and cognitive experiments using the Go programming language. The library is designed to address some limitatโ€ฆ

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Neuroscience Preprint PDF DOI

SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets

Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, Abigail Morrison, Renato Duarte ยท 2025

Sequential structure is a key feature of multiple domains of natural cognition and behavior, such as language, movement and decision-making. Likewise, it is also a central property of tasks to which wโ€ฆ

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Neuroscience Preprint PDF DOI

Macular: a multi-scale simulation platform for the retina and the primary visual system

Bruno Cessac, Erwan Demairy, Jerome Emonet, Evgenia Kartsaki, Thibaud Kloczko, Come Le Breton, Nicolas Niclausse, Selma Souihel, Jean-Luc Szpyrka, Julien Wintz ยท 2025

We developed Macular, a simulation platform with a graphical interface, designed to produce in silico experiment scenarios for the retina and the primary visual system. A scenario consists of generatiโ€ฆ

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Neuroscience Preprint PDF DOI

Variational Representational Similarity Analysis (vRSA) for M/EEG

Alex Lepauvre, Lucia Melloni, Karl Friston, Peter Zeidman ยท 2025

This paper introduces variational representational similarity analysis RSA (vRSA) for electromagnetic recordings of neural responses (e.g., EEG, MEG, ECoG or LFP). Variational RSA is a Bayesian approaโ€ฆ

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Neuroscience Preprint PDF DOI

Large Language Model Agents Enable Autonomous Design and Image Analysis of Microwell Microfluidics

Dinh-Nguyen Nguyen, Sadia Shakil, Raymond Kai-Yu Tong, Ngoc-Duy Dinh ยท 2025

Microwell microfluidics has been utilized for single-cell analysis to reveal heterogeneity in gene expression, signaling pathways, and phenotypic responses for identifying rare cell types, understandiโ€ฆ

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Neuroscience Preprint PDF DOI

A Computational Perspective on NeuroAI and Synthetic Biological Intelligence

Dhruvik Patel, Md Sayed Tanveer, Jesus Gonzalez-Ferrer, Alon Loeffler, Brett J. Kagan, Mohammed A. Mostajo-Radji, Ge Wang ยท 2025

NeuroAI is an emerging field at the intersection of neuroscience and artificial intelligence, where insights from brain function guide the design of intelligent systems. A central area within this fieโ€ฆ

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Neuroscience Preprint PDF DOI

A tutorial on electrogastrography using low-cost hardware and open-source software

Evgeniya Anisimova, Sameer N.B. Alladin, Styliani Tsamaz, Edwin S. Dalmaijer ยท 2025

Electrogastrography is the recording of changes in electric potential caused by the stomach's pacemaker region, typically through several cutaneous sensors placed on the abdomen. It is a worthwhile teโ€ฆ

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Neuroscience Preprint PDF DOI

Statistical-Spatial Model for Motor Potentials Evoked Through Transcranial Magnetic Stimulation for the Development of Closed-Loop Procedures

Maryam Farahmandrad, Stefan Goetz ยท 2025

The primary motor cortex appears to be in the center of transcranial magnetic stimulation (TMS). It is one of few locations that provide directly observable responses, and its physiology serves as modโ€ฆ

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Neuroscience Preprint PDF DOI

A dynamical memory with only one spiking neuron

Damien Depannemaecker, Adrien d'Hollande, Jiaming Wu, Marcelo J. Rozenberg ยท 2025

Common wisdom indicates that to implement a Dynamical Memory with spiking neurons two ingredients are necessary: recurrence and a neuron population. Here we shall show that the second requirement is nโ€ฆ

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Neuroscience Preprint PDF DOI

Go Figure: Transparency in neuroscience images preserves context and clarifies interpretation

Paul A. Taylor, Himanshu Aggarwal, Peter Bandettini, Marco Barilari, Molly Bright, Cesar Caballero-Gaudes, Vince Calhoun, Mallar Chakravarty, Gabriel Devenyi, Jennifer Evans, Eduardo Garza-Villarreal, Jalil Rasgado-Toledo, Remi Gau, Daniel Glen, Rainer Goebel, Javier Gonzalez-Castillo, Omer Faruk Gulban, Yaroslav Halchenko, Daniel Handwerker, Taylor Hanayik, Peter Lauren, David Leopold, Jason Lerch, Christian Mathys, Paul McCarthy, Anke McLeod, Amanda Mejia, Stefano Moia, Thomas Nichols, Cyril Pernet, Luiz Pessoa, Bettina Pfleiderer, Justin Rajendra, Laura Reyes, Richard Reynolds, Vinai Roopchansingh, Chris Rorden, Brian Russ, Benedikt Sundermann, Bertrand Thirion, Salvatore Torrisi, Gang Chen ยท 2025

Visualizations are vital for communicating scientific results. Historically, neuroimaging figures have only depicted regions that surpass a given statistical threshold. This practice substantially biaโ€ฆ

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Neuroscience Preprint PDF DOI

Research on Event-Related Desynchronization of Motor Imagery and Movement Based on Localized EEG Cortical Sources

Yuqing Wang ยท 2025

This study investigates event-related desynchronization (ERD) phenomena during motor imagery and actual movement. Using sLORETA software, we analyzed the cortical current source density distributions โ€ฆ

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Neuroscience Preprint PDF DOI

Automated generation of epilepsy surgery resection masks; The RAMPS pipeline

Callum Simpson, Gerard Hall, John S. Duncan, Yujiang Wang, Peter N. Taylor ยท 2025

MRI-based delineation of brain tissue removed by epilepsy surgery can be challenging due to post-operative brain shift. In consequence, most studies use manual approaches which are prohibitively time-โ€ฆ

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Neuroscience Preprint PDF DOI

From Bedside to Desktop: A Data Protocol for Normative Intracranial EEG and Abnormality Mapping

Heather Woodhouse, Sarah J. Gascoigne, Gerard Hall, Callum Simpson, Nathan Evans, Gabrielle M. Schroeder, Peter N. Taylor, Yujiang Wang ยท 2025

Normative mapping is a framework used to map population-level features of health-related variables. It is widely used in neuroscience research, but the literature lacks established protocols in modaliโ€ฆ

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Neuroscience Preprint PDF DOI

Data mining the functional architecture of the brain's circuitry

Adam S. Charles ยท 2025

The brain is a highly complex organ consisting of a myriad of subsystems that flexibly interact and adapt over time and context to enable perception, cognition, and behavior. Understanding the multi-sโ€ฆ

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Neuroscience Preprint PDF DOI

Role of Data-driven Regional Growth Model in Shaping Brain Folding Patterns

Jixin Hou, Zhengwang Wu, Xianyan Chen, Li Wang, Dajiang Zhu, Tianming Liu, Gang Li, Xianqiao Wang ยท 2024

The surface morphology of the developing mammalian brain is crucial for understanding brain function and dysfunction. Computational modeling offers valuable insights into the underlying mechanisms forโ€ฆ

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Neuroscience Preprint PDF DOI

AI-Driven Physics-Informed Bio-Silicon Intelligence System: Integrating Hybrid Systems, Biocomputing, Neural Networks, and Machine Learning, for Advanced Neurotechnology

Vincent Jorgsson, Raghav Kumar, Mustaf Ahmed, Maxx Yung, Aryaman Pattnayak, Sri Pradhyumna Sridhar, Vaishnav Varma, Arun Ram Ponnambalam, Georg Weidlich, Dimitris Pinotsis ยท 2024

We present the Bio-Silicon Intelligence System (BSIS), an innovative hybrid platform that integrates biological neural networks with silicon-based computing. The BSIS, a Physics-Informed Hybrid Hierarโ€ฆ

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Neuroscience Preprint PDF DOI

A quality control analysis of the resting state hypothesis via permutation entropy on EEG recordings

Alessio Perinelli, Leonardo Ricci ยท 2024

The analysis of electrophysiological recordings of the human brain in resting state is a key experimental technique in neuroscience. Resting state is indeed the default condition to characterize brainโ€ฆ

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Neuroscience Preprint PDF DOI

Multiple Neuronal Specializations Elicited By Socially Driven Recognition Of Food Odors

Viktor Plusnin, Nadezhda Khoroshavkina, Ali Abonakour, Arsenii Onuchin, Viktoriya Manyukhina, Nadezhda Titova, Artem Kirsanov, Vasiliy Solodovnikov, Nikita Pospelov, Vladimir Sotskov ยท 2024

This study investigates the dynamics of non-spatial specializations in hippocampal place cells during exposure to novel environments. Hippocampal place cells, known for their role in spatial mapping, โ€ฆ

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Neuroscience Preprint PDF DOI

EM and XRM Connectomics Imaging and Experimental Metadata Standards

Miguel E. Wimbish, Nicole K. Guittari, Victoria A. Rose, Jorge L. Rivera Jr, Patricia K. Rivlin, Mark A. Hinton, Jordan K. Matelsky, Nicole E. Stock, Brock A. Wester, Erik C. Johnson, William R. Gray-Roncal ยท 2024

High resolution volumetric neuroimaging datasets from electron microscopy (EM) and x-ray micro and holographic-nano tomography (XRM/XHN) are being generated at an increasing rate and by a growing numbโ€ฆ

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Neuroscience Preprint PDF DOI

SciOps: Achieving Productivity and Reliability in Data-Intensive Research

Erik C. Johnson, Thinh T. Nguyen, Benjamin K. Dichter, Frank Zappulla, Montgomery Kosma, Kabilar Gunalan, Yaroslav O. Halchenko, Shay Q. Neufeld, Kristen Ratan, Nicholas J. Edwards, Susanne Ressl, Sarah R. Heilbronner, Michael Schirner, Petra Ritter, Brock Wester, Satrajit Ghosh, Maryann E. Martone, Franco Pestilli, Dimitri Yatsenko ยท 2023

Scientists are increasingly leveraging advances in instruments, automation, and collaborative tools to scale up their experiments and research goals, leading to new bursts of discovery. Various scientโ€ฆ

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